Hello @Brian_Sage
Let’s take these one at a time, and before anything else: please stop moving music files around for now. Every time a folder moves or a storage location gets disabled, Roon loses track of which files your playlists point to. That is what shrank your playlists, and continuing to reorganize will keep making it worse. Get the migration done first, then tidy up afterwards.
On your playlists
This is the important one. Your playlists referenced tracks in the “reconstructed/audio” folder. When you moved that music into an iTunes folder and disabled the old location, Roon no longer had those tracks, so the playlist entries went away entirely. Playlist Improver shows nothing to fix because the entries were removed rather than marked unavailable, so there is nothing left for it to repair.
So the key question: do you have a Roon backup from before you started moving things? If you do, restoring it is by far the cleanest way to get your playlists back, and we would do that before anything else. Please check Settings, then Backups, and tell us what dated backups are listed and where they are stored.
If there is no earlier backup, there is one more thing to try. In Settings, then Storage, find the old “reconstructed/audio” location, and instead of deleting it, edit its path to point at wherever those files now live and re-enable it. Whether that works depends on whether the folder structure underneath stayed the same, but it costs nothing to try.
On keeping your folders separate
Good news, you do not have to squeeze everything into one folder. Roon is perfectly happy with iTunes, HDTracks and Qobuz kept apart. What we would suggest is putting them side by side underneath one parent folder, like this:
Music\iTunes
Music\HDTracks
Music\Qobuz
Then you point Roon at the single Music folder, and it picks up all three. You keep your organization, and Roon only has one storage location to track, which is much easier to manage later. The one thing to avoid is adding both a parent folder and a folder inside it as separate locations, since that causes Roon to see everything twice.
On the USB drive
It is worth separating two different things here, because they need very different drives, and you may not need to buy anything at all.
For the backup itself: a Roon backup is just your database, so it is small, usually well under a few gigabytes. Any USB flash drive, 32 GB or so, is more than enough. You do not need anything fast or expensive for this.
In fact, you may not need one at all. Your Nucleus One can read a backup straight from a shared folder on your PC over your network, so you can restore without moving any hardware around. If you would like to go that route, let us know and we will walk you through sharing the folder.
For your music: that is a different matter, and a flash drive is the wrong tool. Music needs a proper external/internall SSD or hard drive, sized to your library with room to grow.
But before you buy anything: you mentioned earlier that most of your music already sits on a D: drive, which you described as an external hard drive. If that drive can simply be unplugged from your PC and plugged into the Nucleus One, that may be all you need. Please could you tell us the make and model of that D: drive, and whether it connects by USB?