I assume this includes deleting the WINEPREFIX directory.
A manual installation in a new WINEPREFIX on my system still works.
env WINEPREFIX=~/.Test wine wineboot &> wineboot_log.txt
Here I chose to abort the installation of the wine-mono package.
wineboot_log.txt
wine: created the configuration directory '/home/daniel/.Test'
0009:err:file:init_redirects cannot open L"C:\\windows" (c000000f)
0012:err:ole:marshal_object couldn't get IPSFactory buffer for interface {00000131-0000-0000-c000-000000000046}
0012:err:ole:marshal_object couldn't get IPSFactory buffer for interface {6d5140c1-7436-11ce-8034-00aa006009fa}
0012:err:ole:StdMarshalImpl_MarshalInterface Failed to create ifstub, hres=0x80004002
0012:err:ole:CoMarshalInterface Failed to marshal the interface {6d5140c1-7436-11ce-8034-00aa006009fa}, 80004002
0012:err:ole:get_local_server_stream Failed: 80004002
0014:err:ole:marshal_object couldn't get IPSFactory buffer for interface {00000131-0000-0000-c000-000000000046}
0014:err:ole:marshal_object couldn't get IPSFactory buffer for interface {6d5140c1-7436-11ce-8034-00aa006009fa}
0014:err:ole:StdMarshalImpl_MarshalInterface Failed to create ifstub, hres=0x80004002
0014:err:ole:CoMarshalInterface Failed to marshal the interface {6d5140c1-7436-11ce-8034-00aa006009fa}, 80004002
0014:err:ole:get_local_server_stream Failed: 80004002
0019:fixme:ntdll:NtLockFile I/O completion on lock not implemented yet
0019:err:mscoree:LoadLibraryShim error reading registry key for installroot
0019:err:mscoree:LoadLibraryShim error reading registry key for installroot
0019:err:mscoree:LoadLibraryShim error reading registry key for installroot
0019:err:mscoree:LoadLibraryShim error reading registry key for installroot
0019:fixme:msi:internal_ui_handler internal UI not implemented for message 0x0b000000 (UI level = 1)
0019:fixme:msi:internal_ui_handler internal UI not implemented for message 0x0b000000 (UI level = 1)
0010:err:winediag:SECUR32_initNTLMSP ntlm_auth was not found or is outdated. Make sure that ntlm_auth >= 3.0.25 is in your path. Usually, you can find it in the winbind package of your distribution.
0010:fixme:dwmapi:DwmIsCompositionEnabled 0x6dbd1518
001b:fixme:iphlpapi:NotifyIpInterfaceChange (family 0, callback 0x69ebd3de, context 0x966590, init_notify 0, handle 0x125fa10): stub
0037:fixme:ntdll:NtLockFile I/O completion on lock not implemented yet
0037:err:mscoree:LoadLibraryShim error reading registry key for installroot
0037:err:mscoree:LoadLibraryShim error reading registry key for installroot
0037:err:mscoree:LoadLibraryShim error reading registry key for installroot
0037:err:mscoree:LoadLibraryShim error reading registry key for installroot
0037:fixme:msi:internal_ui_handler internal UI not implemented for message 0x0b000000 (UI level = 1)
0037:fixme:msi:internal_ui_handler internal UI not implemented for message 0x0b000000 (UI level = 1)
0035:err:winediag:SECUR32_initNTLMSP ntlm_auth was not found or is outdated. Make sure that ntlm_auth >= 3.0.25 is in your path. Usually, you can find it in the winbind package of your distribution.
0035:fixme:dwmapi:DwmIsCompositionEnabled 0x6d5d3018
0039:fixme:iphlpapi:NotifyIpInterfaceChange (family 0, callback 0x6a0cb608, context 0x8d8878, init_notify 0, handle 0x111fc88): stub
wine: configuration in '/home/daniel/.Test' has been updated.